Table 2. SNP statistics after QC for Hanwoo autosomes

BTA	No. of SNPs before QC	No. of SNPs after QC	Remove frequency	Average distance (kb)	Standard deviation (kb)	Min distance (kb)	Max distance (kb)	Total distance (Mb)
1	3,221	2,614	0.23	60.50	54.60	0.05	936.23	52.10
2	2,756	2,181	0.26	62.70	68.00	0.08	1,087.31	84.73
3	2,579	2,038	0.27	59.50	62.30	0.01	863.15	42.65
4	2,477	1,932	0.28	62.10	53.20	0.03	507.93	83.84
5	2,154	1,662	0.30	72.90	70.60	0.04	818.54	113.01
6	3,157	2,526	0.25	47.10	56.80	0.03	1,601.81	83.13
7	2,478	2,020	0.23	55.70	66.30	0.13	1,177.03	63.54
8	2,243	1,776	0.26	63.70	54.20	0.08	547.23	51.10
9	2,073	1,623	0.28	65.00	62.70	0.45	642.76	62.10
10	2,355	1,872	0.26	55.70	92.80	0.07	,3259.34	118.98
11	2,179	1,717	0.27	62.50	58.90	0.13	833.19	121.14
12	1,650	1,252	0.32	72.60	120.60	0.24	2,470.22	46.18
13	1,681	1,331	0.26	63.00	55.20	0.07	715.70	65.16
14	2,266	1,806	0.25	46.10	46.50	0.01	505.77	157.88
15	1,665	1,312	0.27	64.60	64.90	0.01	969.41	45.33
16	1,598	1,241	0.29	65.70	70.20	0.18	1,360.52	74.85
17	1,567	1,229	0.28	61.00	65.50	0.16	1,301.14	136.66
18	1,301	1,041	0.25	62.70	63.10	0.51	966.71	71.10
19	1,377	1,120	0.23	56.80	53.30	0.73	586.98	107.18
20	1,568	1,237	0.27	57.90	52.00	0.47	559.10	90.83
21	1,397	1,149	0.22	61.90	70.30	0.49	1,322.35	112.38
22	1,209	969	0.25	63.20	52.80	0.09	494.16	61.22
23	1,124	924	0.22	56.40	53.80	0.32	488.53	81.41
24	1,229	1,000	0.23	62.20	52.90	0.06	454.80	50.95
25	937	783	0.20	54.50	45.50	0.07	332.62	120.01
26	1,030	825	0.25	61.80	47.50	0.28	394.54	105.46
27	917	745	0.23	60.90	60.20	0.15	587.19	121.08
28	902	714	0.26	64.80	56.70	0.02	555.53	104.17
29	1,026	806	0.27	63.50	65.40	0.03	1,060.19	71.59
Total	52,116	41,445	0.26 (Average)	60.93 (Average)	61.96 (Average)	0.17 (Average)	944.83 (Average)	2,499.76

SNP, single nucleotide polymorphism; QC, quality control; BTA, Bos taurus autosomes; kb, kilobases; Mb, megabases.