Table 4. Linkage disequilibrium (r2) information in all scenario data sets
| Data type | 0–20 kb interval | 20–50 kb interval | 50–100 kb interval | 100–200 kb interval | 200–1,000 kb interval |
| No. SNP pair | Average r2 (SD) | No. SNP pair | Average r2 (SD) | No. SNP pair | Average r2 (SD) | No. SNP pair | Average r2 (SD) | No. SNP pair | Average r2 (SD) |
| Val 1 | 750 | 0.28 (0.33) | 22,732 | 0.17 (0.25) | 33,014 | 0.10 (0.17) | 64,732 | 0.06 (0.11) | 500,518 | 0.02 (0.04) |
| Val 2 | 751 | 0.28 (0.33) | 22,722 | 0.17 (0.25) | 33,002 | 0.10 (0.17) | 64,713 | 0.06 (0.11) | 500,429 | 0.02 (0.04) |
| Val 3 | 751 | 0.28 (0.33) | 22,731 | 0.17 (0.25) | 33,010 | 0.10 (0.17) | 64,732 | 0.06 (0.11) | 500,464 | 0.02 (0.04) |
| Val 4 | 752 | 0.28 (0.33) | 22,727 | 0.17 (0.25) | 33,006 | 0.10 (0.17) | 64,704 | 0.06 (0.11) | 500,397 | 0.02 (0.04) |
| Ref 500 | 744 | 0.27 (0.32) | 22,572 | 0.17 (0.24) | 32,793 | 0.09 (0.16) | 64,243 | 0.05 (0.10) | 496,752 | 0.02 (0.04) |
| Ref 1,000 | 749 | 0.27 (0.32) | 22,604 | 0.17 (0.24) | 32,814 | 0.09 (0.16) | 64,299 | 0.05 (0.10) | 497,219 | 0.02 (0.04) |
| Ref 1,500 | 749 | 0.27 (0.32) | 22,618 | 0.17 (0.24) | 32,827 | 0.09 (0.16) | 64,374 | 0.05 (0.10) | 497,641 | 0.02 (0.04) |
| Ref 2,000 | 750 | 0.27 (0.32) | 22,646 | 0.17 (0.24) | 32,877 | 0.09 (0.16) | 64,488 | 0.05 (0.10) | 498,467 | 0.02 (0.04) |
| Ref 2,000 + (val 1) | 752 | 0.27 (0.32) | 22,739 | 0.17 (0.24) | 33,025 | 0.09 (0.16) | 64,758 | 0.05 (0.10) | 500,701 | 0.02 (0.04) |
| Ref 2,000 + (val 2) | 752 | 0.27 (0.32) | 22,739 | 0.17 (0.24) | 33,025 | 0.09 (0.16) | 64,758 | 0.05 (0.10) | 500,701 | 0.02 (0.04) |
| Ref 2,000 + (val 3) | 752 | 0.27 (0.32) | 22,739 | 0.17 (0.24) | 33,025 | 0.09 (0.16) | 64,758 | 0.05 (0.10) | 500,701 | 0.02 (0.04) |
| Ref 2,000 + (val 4) | 752 | 0.27 (0.32) | 22,739 | 0.17 (0.24) | 33,025 | 0.09 (0.16) | 64,758 | 0.05 (0.10) | 500,701 | 0.02 (0.04) |
SNP, single nucleotide polymorphism; Val, validation, Ref, reference population.