| Arylsulfatase | 38 | Arylsulfatase | 3.1. |
| Arabinofuranohydrolase | 2 | Non-reducing end beta-L-arabinofuranosidase, Arabinoxylan arabinofuranohydrolase precursor | 3.2. |
| Allantoinase | 1 | Allantoinase | 3.5. |
| Agmatinase | 1 | Agmatinase | 3.5. |
| Arginase | 1 | Arginase | 3.5. |
| α-Galactosidase | 5 | Alpha-galactosidase | 3.2. |
| α-Galacturonidase | 1 | Alpha-galacturonidase | 3.2. |
| β-Glucronidase | 6 | Beta-glucuronidase | 3.2. |
| β-Glucosidase | 4 | Periplasmic beta-glucosidase precursor, Thermostable beta-glucosidase B, Oligo-1%2C6-glucosidase | 3.2. |
| β-Galactosidase | 8 | Beta-galactosidase, Evolved beta-galactosidase subunit alpha | 3.2. |
| β-Xylosidase | 3 | Beta-xylosidase | 3.2. |
| Cellulase | 7 | Endoglucanase precursor, Endoglucanase Z precursor | 3.2. |
| Chitinase | 1 | Chitinase A1 precursor | 3.2. |
| D-Aminoacylase | 1 | D-aminoacylase | 3.5. |
| Galactose | 3 | Galactose/methyl galactoside import ATP-binding protein | 3.6. |
| Glutaminase | 1 | Glutaminase | 3.5. |
| Glucoamylase | 3 | Glucoamylase precursor | 3.2. |
| Lipase | 1 | Lipase 3 precursor | 3.1. |
| Nitrilase | 1 | Nitrilase | 3.5. |
| Protease | 25 | Germination protease precursor, Protease 3 precursor, Putative metalloprotease, Putative zinc protease, Serine endoprotease, Serine protease Do-like, Serine protease, Rhomboid protease, Carboxy-terminal processing protease precursor, putative CtpA-like serine protease, ATP-dependent protease subunit, putative protease precursor, Sporulation-specific protease, Protease, ATP-dependent protease proteolytic subunit, Lon protease, putative protease, Putative cysteine protease | 3.4.3.2. |
| Polygalacturonase | 3 | Polygalacturonase | 3.2. |
| Thiaminase | 2 | Thiaminase-2 | 3.5. |
| Urease | 6 | Urease subunit beta, Urease subunit gamma, Urease subunit alpha | 3.5. |
| Xylanase | 27 | Endo-1%2C4-beta-xylanase A precursor, Endo-1%2C4-beta-xylanase Z precursor, Beta-1%2C3-xylanase XYL4 precursor | 3.2. |