Table 1. Genome properties and functional annotation of Treponema phagedenis KS1

Property Value
Genome size (bp) 3,769,422
Contigs (n) 16
GC content (%) 40.03%
Protein-coding genes (CDS) 3,460
rRNA 6
tRNA 49
CDS with a functional category (EggNOG) 3,342
 Translation, ribosomal structure and biogenesis 152
 Transcription 111
 Replication, recombination and repair 294
 Cell cycle control, cell division, chromosome partitioning 17
 Defense mechanisms 76
 Signal transduction mechanisms 64
 Cell wall/membrane/envelope biogenesis 121
 Cell motility 45
 Intracellular trafficking, secretion, and vesicular transport 22
 Posttranslational modification, protein turnover, chaperones 78
 Energy production and conversion 106
 Carbohydrate transport and metabolism 197
 Amino acid transport and metabolism 149
 Nucleotide transport and metabolism 58
 Coenzyme transport and metabolism 49
 Lipid transport and metabolism 40
 Inorganic ion transport and metabolism 121
 Secondary metabolites biosynthesis, transport and catabolism 10
 General function prediction only 581
 Function unknown 1,073
CDS with single function 3,320
CDS with multiple functions 22
No hit 118
GC, guanine-cytosine; CDS, coding sequence ; tRNA, transfer RNA; rRNA, ribosomal RNA.