Table 2. The genotype, allele and minor allele frequency, and HWE for six candidate SNPs used in this study
SNP (gene) | Allele (n) | Frequency | Genotype (n) | Frequency | MAF | H | HWE |
rs41919985 (FASN) | G (95) | 0.85 | GG (39) | 0.70 | 0.15 | 0.26 | 0.18 |
A (17) | 0.15 | GA (17) | 0.30 | | | |
- | - | AA (0) | 0.00 | | | |
rs41255693 (SCD) | T (58) | 0.52 | TT (13) | 0.23 | 0.48 | 0.50 | 0.28 |
C (54) | 0.48 | TC (32) | 0.57 | | | |
- | - | CC (11) | 0.20 | | | |
rs41729173 (FABP4) | C (85) | 0.76 | CC (33) | 0.59 | 0.24 | 0.37 | 0.59 |
G (27) | 0.24 | CG (19) | 0.34 | | | |
- | - | GG (4) | 0.07 | | | |
rs136261927 (FADS1) | G (57) | 0.51 | GG (17) | 0.30 | 0.49 | 0.50 | 0.18 |
A (55) | 0.49 | GA (23) | 0.41 | | | |
- | - | AA (16) | 0.29 | | | |
rs42187261 (FADS1) | A (79) | 0.71 | AA (29) | 0.52 | 0.29 | 0.42 | 0.46 |
G (33) | 0.29 | AG (21) | 0.38 | | | |
- | - | GG (6) | 0.11 | | | |
SNP, single nucleotide polymorphism; n, number of animals; MAF, minor allele frequency; H, heterozygosity; HWE, probability value of Hardy-Weinberg equilibrium; FASN, fatty acid synthase; SCD, stearoyl-CoA desaturase; FABP, fatty acid binding protein; FADS, fatty acid desaturase.