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Journal of Animal Science and Technology
Korean Society of Animal Science and Technology

J Anim Sci Technol

pISSN: 2055-0391, eISSN: 2672-0191

DOI: https://doi.org/10.5187/jast.2023.e134

Article

Complete genome sequence of Lactiplantibacillus plantarum strain GA_C_14 with potential characteristics applicable in the swine industry

Sumin Ryu1, Hyunok Doo1, Eun Sol Kim1, Gi Beom Keum1, Jinok Kwak1, Sriniwas Pandey1, Yejin Choi1, Juyoun Kang1, Sheena Kim1, Hyeun Bum Kim1, Ju-Hoon Lee2
1Dankook University, Cheonan 31116, Korea.
2Seoul National University, Seoul 08826, Korea.

© Copyright 2023 Korean Society of Animal Science and Technology. This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Received: Nov 23, 2023; Revised: Dec 06, 2023; Accepted: Dec 06, 2023

Published Online: Dec 07, 2023

Abstract

In this study, the complete genome of <italic>Lactiplantibacillus plantarum</italic> strain GA_C_14 was sequenced and analyzed. We isolated the <italic>L. plantarum</italic> strain GA_C_14 from gajami sikhae, the Korean traditional food purchased from a local market in Gangneung, South Korea. The genome of the <italic>L. plantarum </italic>strain GA_C_14 consisted of one circular chromosome (3,196,348bp) with a guanine + cytosine (GC) content of 44.7% and one circular plasmid (40,211bp) with a guanine + cytosine (GC) content of 38.9%. The genome annotation revealed 3,083 protein-coding sequences (CDSs), 67 tRNAs, as well as 16 rRNAs. The <italic>L. plantarum </italic>strain GA_C_14 possesses enzymes involved in vitamin B<sub>6</sub> metabolism, such as <italic>gapB</italic> (EC 1.2.1.12), <italic>SerC</italic> (EC 2.6.1.52), <italic>dxs</italic> (EC 2.2.1.7), <italic>SerA</italic> (EC 1.1.1.95), <italic>PdxK</italic> (EC 2.7.1.35), and <italic>PdxH</italic> (EC 1.4.3.5). Moreover, the <italic>L. plantarum</italic> strain GA_C_14 harbors the beta-galactosidase (EC 3.2.1.23) enzyme required for synthesizing galactooligosaccharides (GOS). These results suggest that <italic>L. plantarum</italic> strain GA_C_14 could be utilized as a functional probiotic in the swine industry.

Keywords: Lactiplantibacillus plantarum; Swine; Whole genome sequencing